Okay, so I was trying to help the Followers of the Apocalypse create a deal to get medical supplies from anywhere they could, when I took a break, I came back and tried to load my game, it told me that the DLC was no longer available. I was playing for about 2 hours before this, but all saves worked fine up until a certain part in that quest, which sadly, I cannot pinpoint as I didn't save during the quest. I had gotten up to the point where the Atomic Wrangler agreed to supply, I had just informed the doctor (I forget her name) that they had agreed.
I do not own any of the pre-order packages.
My save file is 40 hours and I have had no problems (except a couple of crashes) until this point.
I loaded a previous save file, it worked as normal.
EDIT: After playing through the "quest" again, doing everything exactly as I did when the bug first occurred, I am unable to replicate the problem, which, at a guess, means that the bug will only manifest under
extremely specific conditions.