1) There is a farm settlement (name withheld due to possible spoiler) that I cleared of ghouls early in the game. I spent about 20 minutes going around and clearing the area of their dead bodies by dumping them outside of the settlement area. Yet when I go back, the bodies are back exactly where they were. I've tried several times, but they always reappear when I return. I try to clean my settlements up to be as clean as possible, and these dead bodies just kind of ruin that. There's even one body that is draqed over a table, a table that I moved, but the body will reappear, hanging in the air as if the table were still there. Seems like a glitch to me. Certainly not game breaking, but annoying nonetheless.
2) When checking the workshop section in the pipboy, the stats of my settlements are sometimes displayed incorrectly. It might show 6 beds instead of 20, or no water instead of 80, ect. There have been times that the depleted stats are do to an attack that I missed. But other times, I go back to a settlement and they haven't been attacked, and all resources are fine. Rechecking the pipboy, the stats have returned to correctly show the resources. This happened a lot early in my game, but less so now that I'm level 26. Just seems like another glitch, not critical, just annoying.
3) Settlement attacks seem to come from only one or two directions, at least so far in my experience. Does this ever change? I spent hours early on trying to build those huge wood & barbed wire fences around my settlements, with guard towers and turrets at any possible entrance point. Now it seems like I wasted a lot of time and resources trying to cover all angles when it really wasn't necessary. So now I'm spending hours reclaiming the fences for the wood & steel, and moving my turrets and guard towers to cover one or two entrance points and crops/water/power.
4) I love the construction part and strategizing my settlements and supply lines. I just wish the construction limit could be raised (sorry, that's not a question, just a statement).
5) Why can't I repair all of my crops that have been destroyed during an attack. Some repair, some don't. I click on the damage crop and the dialog box states: "use one tato (or whatever crop you're repairing) to repair". I do, but the crop remains destroyed. Just another inconsistent glitch. I just end up planted more crops instead of wasting resources trying to repair those that won't allow me to repair them.