Two things that made me sad:
Spoiler
Killing Scribe Hayley in the RR assault on Cambridge police station. I made sure not to headshot kill her, leaving her features intact in death. I also arranged her body on a bunk in the station to make her look peaceful in death.
Spoiler
Glory dying and not getting a hero's burial in RR HQ, unlike Patriot who did get a eulogy and a tomb even though the little [censored] didn't deserve it.