The dialog with Preston gets kind of buggy between the points when Taking Independence triggers and when you actually take it back. With my first character I was completely unable to turn radiant quests in to him until after I completed Taking Independence. Is he an active companion when you're trying to do this? If so, try dismissing him, and then talking to him. He'll probably still do the same dialog asking if you're ready to take the Castle back, but if you talk to him again immediately after you might get the option.
I always recommend this map. Just type in Salem and Libertalia in the search bar on the left and you'll be able to find the locations.
http://fallout4map.com/
Do you have an active quest at Libertalia? There is one quest that takes you there, but it's kind of a late-game quest. It's not really a location that I'd suggest going to at a lower level. It is a really cool location though. It's one of my favorites in the game, actually.