I noticed this tidbit a while back when doing runs between spawn points aka was looking for lvl 4 vendors to recruit, long story short I found out the hard way they wont actly show in town.
but back on topic if u run across manta man you can ether steal or kill and loot a junk jet from him.
ive killed him 5 times so far with 5 different games so I'm thinking the drop is static
I didn't choose bos as my faction so this helped me out as normally id never get the opportunity to have this fun gun.