I arrived at the jefferson memorial to find at first 3 friendly enclave soldiers that had killed all the super mutants. I proceeded and encountered many hostile enclave troops. I killed at least 15-20 by the time I got across the bridge near piratey pete's dock. There were still a ton more popping out all over the place. I quit after that. At first I thought it was mod related, but after I removed all the mods I have installed since the last time I was in this area with no issues (with another character) and still the issue persisted. I'm going to try going without any mods once the game unfreezes as it froze up when I hit the quit button. I will report as to whether or not that fixes it.
Edit:
I wonder if this is part of some late main quest spawn as they seem to be on the path to the memorial coming from the north, and there is just too many of them and it looks too organized to be a random thing. I have never gone further than the waters of life so I don't really know if this is something that happens later on or not.
Update: I tried it without any mods. only the official DLC and it still happened. going to try it without any DLC's
Update: Even with nothing but Fallout 3 esm. the issue still persists. I think I will have to abandon this character. I would still like to know if anyone knows what is going on, and if there is a way to prevent it from occurring again.