In Fallout 3, the Enclave Remnants actually turned " Neutral/Good" and began to clean the wasteland of mutants, killing off ghouls, super muties, mutated humans, and passed out freaking pure water to people who took the " Genetic Compliance Test", which seemed pretty damn fair to me. What I love about Eden's plan is that it doesn't kill normal humans, it only kills mutated humans and creatures.
In Eden's dialogue, he specifically mentioned that he "Modified" Richardsons FEV from the West Coast and made it more potent, but took out the " Inoculation" perk from it, which meant that most wastelanders would live, if they weren't mutated, and since the airborne FEV from the West Coast after the West Tek Facility blew up only reached California, that mean's most D.C residents would have been pure, thus rendering the solution valid and partially moral, as they say.
Problem: People whine too much about morality. Point to be take: The mean's meet the end.
Maybe it's been a while since I played through that part, but my understanding's always been that "mutated," in the eyes of the Enclave (and by extension, their "final solution virus" stuff) is a pretty broad category of humanity. Sure, you could take a "Genetic Compliance Test," but just how many Wastelanders are we assuming passed that test? Pretty much everyone in the Wasteland, at this point, has been mutated to some degree, technically. My understanding of this virus's actual intention was that it would virtually eradicate
all human life on the planet (except those - like the Enclave - inoculated to the virus,) clearing the way for those in the Vaults (who would be the only "pure strain" humans left alive - the rest of the populace having been exposed to constant radiation for a few generations now.)
Sure, it only kills those who have been mutated, but that's the catch - if everyone's been mutated, then that still kills everyone.
Besides - at best, we're talking about mass murder, here. A mutated human is, still a human. A Supermutant, even, may often be rather mean-spirited and not overly bright, but they're still sentient beings. It's not, technically, the most "moral" thing ever to slaughter the entire race in one fell swoop. Call it what you want, but it's certainly not moral.
(And I won't get into the "ends justify the means" thing, because that's a little close to real-world discussion; and thus probably kind of a slippery slope.)
Problem Point: Whining and anti-Enclave sentiment because of Richardsons sick plans. THAT WAS RICHARDSON, NOT NAVARRO, NOT SGT.GRANITE, and NOT EVERY CITIZEN OR SCIENTIST. THAT WAS RICHARDSON. GET IT RIGHT.
The Enclave in Fallout 3 weren't under the leadership of a psycho. Eden had genuine plans, and people say he lied to the player when he offered you a position in the Enclave. Point to be made again: He didn't know you were born on the outside, and he didn't know you were probably mutated, so that's why the FEV killed you. He had a genuine offer.
Eden's charisma and convincing arguments are exactly what is so scary about the Enclave in the first place. I thought they did a real good job with your talk with Eden - he almost won me over, myself; and I already
knew he was "the bad guy." It all sounds like a great plan until you realize "oh, he's talking about genocide with a biological weapon!"
The villains that I always find to be the most compelling don't consider themselves to be the "bad guys." The "bwah ha ha I'm so evil" sort of two-dimensional villain is nowhere near as scary as the guy who actually thinks he's doing the proper thing. That's Eden and Richardson. They "know," deep down, that what they're doing is saving humanity, saving the world. They aren't evil, they're heroes. Looking at your conversation with him in Fallout 3 from Eden's point of view -
you're the misguided, but well-intentioned antagonist, as he sees it. It's because he's coming from a mindset of "I'm doing the right thing," that he magnanimously offers you a place in his army. (As he sees it, he's recruiting Storm Shadow to join the GI Joes.
)
Of course, as far as relativistic morality is concerned, he's wrong. He might have the very best of intentions, but genocide is genocide. Killing entire races of sentient beings isn't moral. Justifications will always abound, but no - I don't find it "moral," in the true sense of the word.
As far as the "rest" of the Enclave? Yeah, some of them I'm sure are real swell guys. But even disregarding the whole "wipe out the rest of humanity" goal, their "better" goal still comes down to "subjugation of the entire world under our united rule." Which still doesn't strike me as the best of all possible worlds. Even the most moderate of Enclave leadership still want to enslave all the mutants and force the rest of the populace to submit to their rule (and they don't seem to be too picky about killing a bunch of people to do that.)