So just write that in notepad and place it in the morrowind folder?
No, you will need to use the CS.
Open the CS, hit the Folder (Data Files) button, and select the base files you want to modify. In this case, it will likely be at least Morrowind, and perhaps Tribunal and Bloodmoon if you have them. Since these are all masters, you won't be able to select an active file, so ignore that warning.
After that select Gameplay -> Edit Scripts. This will open a text editor called, imaginatively enough, Script Edit. Select Script -> New.
Once you can edit, type in:
begin noggins_rainy_daymodregion "Bitter Coast Region", 0, 0, 0, 0, 100modregion "Ascadian Isles Region", 0, 0, 0, 0, 100; fill this in with the rest of the regions - I'm too lazy to do it here...modregion "West Gash Region", 0, 0, 0, 0, 100stopscript noggins_rainy_dayend
Save that out - it will compile it, and assuming you didn't mistype anything, you should be back in the CS.
Next, if you are using bloodmoon, open GamePlay -> Edit Start Scripts. Add your script to the bottom of the list. If you are NOT using Bloodmoon, then you will need to attach it to something in the game world or use the console, and type "startscript noggins_rainy_day"