nah, I'm not really gonna bother these folks for wanting to break off a chunk of their mod compilation and use it the way i want to. Seems unreasonable, to be told that doing something a certain way will not work, then do it that way anyway, and then demand assistance.
I am not saying that you can take out any of the vital parts, but, rather, you could strip your FCOM installation down to the essentials, no WarCry, no Bob's, etc. Install Fran, MMM, OOO, FCOM Convergence, and any of the other few required FCOM plugins. That's it, probably less than 15 plugins.
http://devnull.sweetdanger.net/fcomloadorder.html <-- You can drop Bob's and WarCry, which makes this...17 required plugins, including the bashed path, and that is only if you choose the Fran SI option, actually you could drop the Named Bosses plugin for Fran too.