I think they dropped the idea to include rain already during design phase.
With all those dry earth and desert style landscape they designed (propably just because they used F1 and F2's design elements as reference) they propably thought that rain would not fit into this environment. Could be strange to have it rain while the player looks at a desert like landscape and wonders, why does everyhting looks so dry here even when its raining every two days ?
With that they dont make a statement that there is no rain in the Capital Wasteland , they just circumvent rain by saying its a rare occurence and , by chance, it just does not happen during the duration of the F3 storyline.
We unknowningly chose the dry season to escape from Vault 101 you know.
Im using a mod that puts rain (and snow) from Oblivion into Fallout 3 for realism. Radioactive rain of course as SCIENCE! and the F3 main storyline demands it to be radioactive.