I can't see anything that would affect Harvest Containers, so that should work if OOO is correctly installed as far as I know. Can't remember hearing about this issue either - but perhaps someone else has better memory than me. That said, I've never used Lite - but if had an issue with HC it should be quite known I'd guess.
After switching to full with the latest patch and starting a new game -- it works. I'm not sure what the problem is but it appears to have been fixed in that patch. I guess I'm going to be going with the full version. Here is my current load order, I skipped the intro, so no need for all those starter mods.
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Oblivion.esm
Children Of Rourken.esm
Jog_X_Mod.esm
Cobl Main.esm
Oscuro's_Oblivion_Overhaul.esm
CM Partners.esm
Unofficial Oblivion Patch.esp
DLCShiveringIsles.esp
Book Collection.esp
SigilStonesixpanded1.5.esp
Cobl Glue.esp
Cobl Si.esp
Cobl Tweaks.esp
Oscuro's_Oblivion_Overhaul.esp
OOO-Container_Trap_Instant_Effects.esp
OOO-WaterFish.esp
Artefacts of the Ancestors.esp
COR-Episode1 Secret of Enourk.esp
Gift of Kynareth.esp
JolardHome.esp
EiAmod.esp
LostSwordOfTheAylied.esp
Quest For The Elements.esp
The Ayleid Steps.esp
thievery.esp
Knights.esp
Kobu's Skip Intro Mod.esp
RTT.esp
The Lost Spires.esp
HeartOftheDead.esp
Harvest [Flora].esp
Harvest [Flora] - Shivering Isles.esp
KT_KhajEyeToggleNoEff.esp
Shadow's Balance Price Fixv2.0.esp
Shadow's Merged Value Fixesv2.0.esp
TUR_GemDust.esp
BoneGrind.esp
Kobu's Character Advancement System.esp
Kobu's 10x Slower Jack-of-All-Trades Mod.esp
Kobu's Lighter Backpack Mod.esp
DaMage's_Eye_Pack.esp
bgBalancingEVCore.esp
bgMagicEV.esp
bgIntegrationEV.esp
Illumination.esp
Forgrum's Travelogue v2.0.esp
Mirror-7984.esp
Triple_magicka-7315.esp
CavernsofCloudRulerTemple.esp