He still has his previous dialogues even after saying sorry and asks for punishment about how harsh he treated me. It's a big immersion breaking when siding with the BoS that I just avoid doing his quests altogether. If he didn't apologize to me, then fine. It's weird for him to still yell at me to earn his respect after. I notice that this happen a lot with the characters, they don't have lines to account for different situation, like Paul acting like I stole all the chem for myself even when I never informed him or know about any of the events going on in the first place.