Yes, he does make all those references to Oblivion events in that quest inside Pelagius' mind.
But I wonder if he merely remembers that those events took place but not his real involvement in them, and as far as he's concerned there has never been a moment when he was not Sheogorath.
Or maybe he does know he was the Champion of Cyrodiil/Hero of Kvatch at some point, but would never openly acknowledge that. Instead, he would rather vaguely mention it in a playful fashion.