Dragon Age 2 got alot of criticism, but I actually really enjoyed it and liked it better than Origins (Origins just felt like a knock-off of the later half of Act 2 and Act 3 of Neverwinter Nights 2 in my opinion.. you rename the Archdemon the King of Shadows and its nearly the same story).. and fyi, Sarcastic female Hawke is best Hawke..
I suppose the Hyperdimension Neptunia games receive a fair bit of Criticism, but the gameplay mechanics are usually extremely solid and the characters light hearted interactions with each other can actually really cheer you up and make you laugh after a hard day (than again, I have always been a fan of moe stuff)
Assassins Creed 3:
this title in particular gets A Lot of hate, but I really enjoyed it.. while I may not have liked the setting (granted im canadian, and honestly i doubt very many people outside the states would have cared for an american revolution Setting, which is maybe why it gets so much hate), but as far as a game goes i thought it was pretty solid.. we had some great new variety in Gear, both the Bow and Rope Darts were very fun and so were muskets (a spear and firearm in one), it added stalking zones which were very helpful in "cant be detected" missions, Connor was actually not a terrible character and was a nice change of pace after 3 games of just Ezio, it had the best Desmond Segments in the series, and the new ways to interact with the environment were really fun (being able to jump from tree to tree in the countryside, when being chased being able to jump through a window and jump out another on the houses far side was a great way to escape guards), and the Naval battles were sort of fun as well..
and this one may be a stretch, but i guess maybe Might & Magic 8: Day of the Destroyer would fit the category, considering it gets poorer reviews and usually quite a bit lower ratings than other entries in the franchises
when talking to Might & Magic fans, many will say this one is their least favorite, and it often gets some very poor reviews compared to some others of the franchises entries.. but in all honesty, it was my favorite. alot of people were bothered by the "you don't create your whole team at the beginning, but make your MC and recruit other people along your journey" mechanic, but I loved it as it allowed me to alter my team composition as my needs evolved (and recruiting Dragons was fun.. even if they were overpowered).. the plot wasn't that bad as a follow up to the previous events in the franchise (after the Kreegan invasion, one of the Anicents constructs arrives to destroy the world in an attempt to purge the Kreegans that had already been (mostly) repelled and we had to stop him), and it was great to see King Roland make a cameo..
granted, M&M8 still had several issues which bothered me.. the capital of the Regnan empire was completely unimpressive, and the plot about defeating Escaton was sorta pointless considering the Reckoning 3 years later ended up destroying all of Enroth anyways..
still though, I think this game while not a masterpiece, is still far better than what alot of reviewers and critics gave it credit for at the time of release..