I believe I have fixed the save issue for now. First, I deleted everything in my "Steam / userdata / ##### / #####" folder. Then changed the security on that now empty ##### folder to deny write privileges to everyone. Deny for users / admins / everyone. Steam tries to sync the "bad" junk from the cloud and it never is able to write it to the folder. The game will then always use whats in my "My Documetns" folder. (Good saves.) I do sometimes get a message when steam starts saying that it wasnt able to sync. awesome in my book! lol
I don't think its steam cloud. I have had it disabled from the beginning and every time it crashes (about every hour or 2 usually) I lose my quick and auto saves.