Would this be an example of where you would make a change to your merged patch in TES4EDIT? I am trying to get a grasp of the types of things to look for.

http://i488.photobucket.com/albums/rr241/Nilok777/Capture-1.jpg

You want to add Zoom... faction from OOO.esp? I guess then yes.
Also your question - is it that you are wondering if Bash misses this faction? But since you are using MMM this are the creatures used and thus MMM factions too; and I can see that maybe the quest to befriend animals from OOO might get affected from missing out on this faction. But I am not proficient enough in these areas to say yea or nay.

Cheers!

Gad I am beginning to think one may need a university to attend to get a prefect game going. Thanks for the reply. Just one more clarification. So I am right in assuming that entries such as the one in the pic, weather it is an item or faction or whatever are not working in the bash?
If I find an entry that looks like this, say a sword item drop on a ghoul, I could pretty much safely move it to bash patch and the ghoul would then have this item as a drop?. I realize that it would be yes and a no answer depending on the mod. I am just speaking in general terms. Thanks again for the advice.

The reason why that is not merged into the Bashed Patch is because OOO is not checked in the faction section of the Bashed Patch, and it should not be. Those are the instructions for OOO when used for another overhaul. I definitely recommend against tweaking the Bashed Patch. You can copy as override that particular record into a new plugin, tag it with the factions tag and check it in the factions menu in the Bashed Patch. This is not a plugin merging topic.