As many of you know, there is a rather extensive list of mods on the CS Wiki of mods that need to be cleaned, are already clean, or should not be clean. In order to make this information more accessible and easier to discuss, I have decided to post the lists here, as well. Note that this is only a list, not the actual guide. If you don't know how to clean your mods, follow the link below.
http://cs.elderscrolls.com/constwiki/index.php/TES4Edit_Cleaning_Guide
These are posted with the original author's (Brumbek) explicit permission. They can also be found on the CS Wiki guide linked above.
Mods That Need Post-Installation Cleaning
1em_Vilja (v3.0.1) [11 ITM, 0 UDR]24HrArenaAliveV2.esp300_Artifacts.esp300_Lore_Dialogue_Updated.esp300 Regal Imperial City 2.esp [0 ITM, 130 UDR]300_White Stallion 4.esp/Feudal Empire [version 4.4, see crucial note below this list!]A Blades House.espAddendum - Diabloblivion.espAdenseEpicDungeon.espAdonnays Elven Weaponry.espAlchemistsCave-COBL.espAliveWaters.espAliveWaters - Koi Addon.espAliyah.espallinonebasemant_COBLnoCM.esp [2 ITM, 0 UDR]All Natural - Real Lights.esp [Version 1.1] found zero ITM, 3 UDRAmajor7 Imperial Furniture.espAmbientTownSounds.espApachii_Goddess_Store.esp [v1.6] 0 ITM, 3 UDRApachii_Heroes_Store.espArcana Restored.esp [zero ITM, 3 UDR]Artefacts of the Ancestors.esp [Corruption present in plugin, see special instructions. Also has wild edits, German names, needs manual cleaning.]Artifacts.esp [1 UDR, 0 ITM, CRC: 66B9B580]Atmospheric Oblivion.esp [0 UDR, 1 ITM, CRC: 9A266EC1]Auriel's Books.espAyleidArrows.esp [77 UDR, 32 ITM, CRC: 1B13049A]bartholm.esp (version 7) [211 ITM, 553 UDR]BD&R - Deepgrave.espBeautiful_Women_NiceOnly.espBeldaElysium.esp Benirus Manor Remade.esp Better Clocks.espBHC_Expanded.esp [12 UDR, 2 ITM, CRC: C73A3567]Blood&Mud.esp 36 ITM, 401 UDMBob's Armory Oblivion.esp [Version 1.1] found 6 ITM, zero UDRBook Jackets Oblivion.esp [234 UDR, 8 ITM, CRC: 88936850]Bruma Mages Guild Restored.esp - 4 ITM, 0 UDRBruma Mages Guild Restored Frostcrag.esp - 10 ITM, 0 UDRBXX_Mines.esp [40 ITM, 23 UDR]C&C - The Blackwood Company.esp Castle_Seaview.esp CDEP-UnderpallCave.esp: 3 ITM, 246 UDRcf_Improved_Barter_Gold.espChoices and Consequences - MMM.esp --> Latest version is cleanChoices & Consequences - OOO.esp 0 ITM, 10 UDRChoices and Consequences.espCliff_BetterLetters.espCliff_CountyNames.esp ClocksOfCyrodiil.espCobl Glue.esp [Version 1.73] found zero ITM, 14 UDRCompleteMagePack.espCrowded Roads Advanced less crowded.espCrowded Roads Revisited.esp [Version 1.1] found 4 ITM, zero UDRCUO_Bravil.esp [v1.2] [42 ITM, 729 UDR, CRC A1A0CAA2]CUO_Bruma.esp [v1.0] [11 ITM, 5 UDR, CRC 79E62DCD]CUO_Chorrol.esp [v1.7] 29 ITM, 468 UDR, CRC A7AF03A3CUO_Leyawiin [v1.4] 47 ITM, 417 (estimated) UDR, CRC FF5FEEE3 [Gives error on undelete, still saves OK]Cybiades.esp 2 ITM, 0 UDRCyrodiil Border Regions 1.2.esp [not recommended to use this, use .ini tweak or Bash]Cyrodiil transportation network 1.3 WZ.esp(DC) Sutch Reborn.esp 8 ITM, 0 UDR Dark Illusion Armour (HGEC Version).esp - 11 ITM, 1 UDR DarkLeatherArmor.espDarknessHollows.esp [v1.6] 22 ITM, 0 UDRDeadlyReflex 5 - Combat Moves.espDLCBattlehornCastle.esp 13 ITM, 74 UDRDLCFrostcrag.esp 73 ITM, 94 UDRDLCHorseArmor.esp 3 ITM, 0 UDRDLCMehrunesRazor.esp 21 ITM, 15 UDRDLCOrrery.esp 11 ITM, 2 UDRDLCSpellTomes.esp 40 ITM, 0 UDRDLCTheivesDen.esp 5 ITM, 135 UDRDLCVileLair.esp 26 ITM, 1 UDRDremoraCompanion.espDuke Patricks - Fresh Kills Now Alert The NPCs.espDwarven Mines.esp 45 ITM, 0 UDREcho_ChapelChant.espEiAmod.esp emperorface.espEnhanced Daedric Invasion.espEnhanced Quest Roleplaying.espeyja.espFairies.esp - 62 ITM, 0 UDRFightersGuildContracts.esp [v1.2] 28 ITM, 9 UDR, CRC BB0D71D0First Person Messages.espFrancesco's Optional Chance of Stronger Enemies.esp [SI version] found 3 ITM, zero UDRGift of Kynareth.esp [3 refs to undelete]GlenvarCastle.esp [Contains a wild water height edit in cell (26, -42) of the Tamriel worldspace that should be removed.]Grandmaster of Alchemy.espGTAesgaard.esp [8 UDR, 107 ITM, CRC: 94A96B7D]hackdirtabyss.espHarvest [Flora] - DLCFrostcrag.esp CRC ADFEEDB5Harvest [Flora] - Shivering Isles.esp CRC 05003A29 HauntedHouse.esp - [5 UDR, 38 ITM, CRC: 2F2F9619]Haunted_House_v1.5.esp [5 UDR, 13 ITM, CRC: C61B8314]HauntedLairMod.esp [Recompile All mod]Heroes of Cyrodiil.espHoarfrost Castle.esp [Version 1.2.2] found 4 ITM, 730 UDRHouseMapMarkersOnlyBought.espIllusionary Summons.espImmersive Travelers.esp [Version 1.0] found 8 ITM, zero UDRIOM - Arena.espIvellon.esp [Version 1.8] found 9 ITM, 13 UDRKDQ - Rural Line Additions.esp - [0 UDR, 2 ITM, CRC: A93FE8B0]kingdomofAlmar.esp [v1.4] 177 ITM, 31 UDR, CRC 72392FC9Knight of Skeleton.espKnightlyArmory.espKnights.esp found 121 ITM, 257 UDRKvatchAftermath.esp [v7.8] 5240 ITM, 390 UDR, CRC 8997D4F1Kvatch Rebuilt.esp [Version 1.1] found 26 ITM, 4 UDR, CRC 34A9FAC9KvatchRising.esp [v1.9] 220 ITM, 3 UDR, CRC 6C91CBEBLegendary Abilities-Shield MOJ.espLegendary Abilities-Reflect MOJ.esp [5 deleted, 0 undeleted]LetThePeopleDrink.esp [Version 2.5] found 9 ITM, 152 UDR [Cleaning fixes potential CTDs]LetThePeopleDrink-Cobl.esp [v2.5, 9 removed, 152 undeleted]LetThePeopleDrink-fountainonly.esp [v2.5, 6 ITM, 93 UDR]LetThePeopleDrink-fountainonly-Cobl.esp [v2.5, 6 ITM, 93 UDR]Living Economy - Items.espLorecreatures.esp - 36 ITM, 1 UDRLost Paladins of the Divines.esp [Version 2.0] found 6 ITM, 3 UDRLostSpires_TheOrderofNibenay_patch.espLostSwordOfTheAylied.espLyn-StoriesFromTheSeaMod.espLynges_Thieves_Highway-10256.espMalevolent.espMannimarcoComplete.espMannimarcoRevisited.esp CRC E2BE41DA [gives error upon undelete about REFR:0000CC06, still saves ok]MD Saddlebags v3.0.espMidasSpells.espMighty Umbra.esp [1 dirty edit]MIS.espMIS Low Wind.esp [0 UDR, 2 ITM, CRC: F343D8EA]MODAssassinsCreed2_Revisited.espMoriarcis.espMorrigan Swords Axes and Shield by Jojjo v1_1.espMounted_Spellcasting.espMTCRiverShackv1.2.esp (version 1.2) 94 ITM, 5 UDR [contains deleted static record for 0008060C and one wild edit in CELL 0002FF46 (Bravil Skooma Den) to remove.]Mystery of the Dulan Cult.esp (Standalone plugin)Naked Nord.esp 18 ITM, 0 UDR [Includes single wild edit, so manual cleaning required]Nanaelas Heartbreak.espNascosto Isles 3.espNew Frostmourne Sword by Jojjo v1_0.espNew Potions by Tealpanda.espNew_Sheoth_Palace_LOD_fix-10076.espnGCD pluginsNico Creations DW Light.esp: 1 ITM, 20 UDRNNWARE06-RhyeliaEmeroEV.espNNWARE2.esp: 11 ITM, 0 UDRNNWAREAyleidDungeons_Series1EV.esp NNWARE Series 1.esp: 20 ITM, 11 UDRNo psychic guards v1.2.espnoDem's City Life.espOblivifall - Ambiant Dungeon SFX.esp [1 ITM, zero UDR]OBSE-Storms & Sound SI.esp [45 removed, 0 undeleted]Origin of the Mages Guild.esp [v7.3] 173 ITM, 383 UDR, CRC 0440FF00P1DSeeYouSleep.esp [Version 1.5.1] found 7 ITM, zero UDRpale_rider's Paladin Equipment_unenchanted_eng.espPearlFarm.esp [12 ITM, 0 UDR, CRC: 590DE30D] PersonalPackGuars.espPhoenixEquipment.espPJs Spell Compendium - Spell Requirements.espPortable Campsite.espProgress pluginsQarl's Harvest 1.1.esp - 8 ITM and 105 UDRQQuix Rock, Rock, Rock Your Ship v3.esp - 12 ITM, 0 UDRRainbows.esp CRC 71BDDEC0realistic water.esp [v3.0] ITM: 3, UDR: 0Reaper's Esmerelda Manor.esp: 48 ITM, 32 UDRReaper's waterfront.esp [ITM: 14, UDR: 60][NOTE: Standalone version only, BC integrated version is clean]rebornaylieds.espReznod_Mannequin.espROHJ2.espRoleplaying Dialogues.espRomancingAhnassi.espRTT.esp 32 ITM, 3 UDRRuin.espRuins of Tarnesia.esp [Version 1.0] found 4440 ITM, 1 UDR + ideally needs manual cleaning tooSalmo the Baker, Cobl.esp [34 removed, 0 undeleted]Sauron_Armor_Chest.espSB IC Palace Tower Light Mod v1.1 - Constant Yellow Light.esp found 2 ITM, zero UDRSecure Guild Chest.espSeductive Idles.esp - 3 ITM, 0 UDRSentientWeapon.espShadowcrest_Vineyard_COBL.espShadow Ranger.esp: 19 ITM, 2 UDR Shdw_Armor Set_Sotonhorian.espSheogoraths_Accords_Of_Madness.esp [v1.4.1] 98 ITM, 71 UDR, CRC C7AFC21DShiveringIsleTravellers.espsir_balin_mod.espSK_Berserk_v0.6.espSlof's Horses Base.espSolace.espSonia.espSoT_TheOrderofNibenay.esp [Has a lot of wild path grid edits too]Spells and Enchanting at guilds.espStar's Fury.espStokerWolff.espStorms & Sound.espsunk ships.esp [135 removed, 34 undeleted]Tales from Elsweyr Anequina.esp 0 ITM, 224 UDRTalosBridgeGateHouse.esp [15 ITM 31 UDR]tda_Armoury.esptda_WitchKingHelm.espT.I.E4MODS.espT.I.E4MODSOOO+FCOM.espTales From the Tomb.esp [v1.1] [1 ITM, 24 UDR, CRC 090F0F66]TamrielTravellers4OOO.espTemplar Fortress.esp (50 ITM, 892 UDR)The Ayleid Steps.esp [Version 3.4] found zero ITM, only 1 UDRThe Lost Spires.espTheElderCouncil.esp [v2.5] 274 ITM, 192 UDR, CRC 763FC748TheElderCouncil_TempleOfTheOne.esp [v1.5] 17 ITM, 0 UDR, CRC 5BEE0900TheForgottenShields.espThe Imperial Water - BETTER CITIES.espThe Mystery of the Dulan cult.esp 4569 ITM, 16 UDR [Better Cities replacer plugin is clean]TheNecromancer.esp [v1.7] 108 ITM, 178 UDR, CRC 06798B41TheOubliette.esp theivery.espTheStorytellersBrotherQuest.espThieves Arsenal.espTombstone Epitaphs.espTOTF.espTR_Stirk.esp CRC BAEEF8CFTRoN.espTyrael Companion.espUFF & RM Gold and Silver Daedric Armor.espUnderdarkSaga.espUngarion1TheWelkyndSword.espVAs Better Gold with no Menu Icon.esp [no version number] found zero ITM, 1 UDRValenwood Improved: 173 ITM, 0 UDR.espValley_View_Estate.espVampire Hunting - Order of the Virtuous Blood.espVaultsofCyrodiil.esp 15 ITM, 58 UDR Verwen Brewery UL_AY_AC Compatable.esp [1 ref to undelete]VHBloodlines 1.2.esp (Arthmoor has supplied an unofficial pre-cleaned version, recommended to use that instead of the main download. Only available for SI version.)*Visually Enhanced Arena.espWAC Birds And Insects.esp 11 ITM, 0 UDRWaterfront Shack.esp 1 ITM, 8 UDR, 15 NULL [Requires manual cleaning to get rid of NULL Refs. See below.]Wayshrines Improved.esp 13 ITM, 0 UDRWeaponsOfTheNine.espWellspring Vale COBL.esp - 2 ITM, 134 UDR West Roads [Version 1.3] found 5 ITM, 10 UDRWeye.espWindfall.espwitchkingsword.espWOTFH_1.3.esp [error when undeleting records is OK]Your_Personal_Museum_Updated-9300.esp
*Unofficial fixed version of VH Bloodlines available http://www.tesnexus.com/downloads/file.php?id=36389
Special Cleaning Instructions:
300_White Stallion 4.esp
Requires custom TES4Edit work to fix errors or it can’t be saved. It's too complicated to list here, but it has to do with editing REFR:00092EC9 so that it uses the Upper version of the door and moving the door into the correct position. Copy the coordinates from REFR:020014BE then delete REFR:020014BE. This also applies to the renamed Feudal Empire version.
While we're talking about White Stallion/Feudal Empire, this mod also has a LOT of errors in the AI Packages. They currently have no faction assignments and need to be updated. You can open the mod in the Construction Set and go to AI Packages and find all the ones with null parameters. Change those to have the following two conditions:
Target no, GetFactionRank, LeyawiinFaction, >=, 0.00 AND Target no, GetFactionRank, KnightsWhiteStallion, >=, 0.00
If that is too much for you, you may be better off not using this mod.
Artefacts of the Ancestors.esp
This mod contains two cells that share the same FormID (DELETEDHdADungeon and DELETEDHdAHaus, with FormID XX000CE8). This will cause TES4Edit to error when you attempt to open the plugin to clean it. There are two methods to correct this:
1. Open the plugin in the Construction Set with Construction Set Extender installed and give one of the cells a new FormID. This is not recommended unless you are a highly experienced modder, though.
2. Use http://www.tesnexus.com/downloads/file.php?id=2114 to remove one of the duplicated cells. Instructions follow:
Once, you have opened the plugin in TESSnip, locate the CELL records DELETEDHdADungeon and DELETEDHdAHaus (Fifth GRUP bunch down in the CELL GRUP, first Sub-Group). As you will be able to tell, these cells have identical FormIDs, and at least one of them needs to go. Given the prefix of the Forms, it is very likely that neither was ever meant to be seen in game, but this is something that really cannot be told at a cursory glance. Anyways, deleting at least one of these cells will fix the error.
This will allow you to edit the plugin in TES4Edit and clean things up.
Waterfront Shack.esp
Contains NULL Refs that must be deleted manually. These are the refs:
XX000EF9
XX000EF8
XX000EF7
XX000EFE
XX000EFB
XX000EFA
XX000EF6
XX000EF5
XX000EF3
XX000EF2
XX000EEF
XX000EEE
XX000EE9
XX000EE8
XX000EE7
Mods That Are Already Clean
1AzuSeraphimSet.espAFK_Weye.espAlchemy Book.espAlir'sArmor.espAll Natural.espAll Natural SI.espAll Natural - Real Lights.espAlluring Potion Bottles v3.espAlyeid Loot Extension.espAndragorn_Weapons_Armors.espAnduril Reforged.esp [Version 1.31]ArmamentariumArtifacts.espArmamentium female.espArmory of the Silver Dragon.espArren.espArtifacts - ArmaCompleteAddon.espArtifactsFemaleArmor.espAsharasCMPartners.espAT2 01-Shiki Armor Set.espAT2 02-Shiki Armor Set.espAtmospheric Oblivion.espattack and hide xxx v2.1.espAudaciousMagery.espBedrolls-OBSE.espBetter Cities (all files)BetterCoins.espBlackLuster.espBookCollisionTest.espBrinaCrossVillage.espBrinaCrossVillage - COBL.espBrina Cross - Unique Forts Patch.espC&C - The Blackwood Company - OOO.espCamping.espCapesandCloaks.espCastle Redwort.espChapel Shop.espChaseCameraMod.espCobl Races TNR.esp [Version 1.53]Cobl Races TNR SI.esp [Version 1.53]Cobl Si.esp [Version 1.63]CM Partners.espCybiadesDungeon.espDACompilation_GO_SI_APN.espDA Sprint.espDAValeriaCuteElf.espDeadly Reflex Bow Sway.espDetect Life Shader [New].espDragonKnightArmor0.9.espDread Knight Armor.espDropLitTorchOBSE.espDS Flaming Arrows.espDungeon Actors Have Torches 1.6 CT.espEgress.espElsweyrAnequina.esp [Reports of ITM and UDR are all false positives. The mod is clean.]Enhanced Economy.esp [Version 5.1] Author: TheNiceOneEnhanced Grabbing.espEnhanced Hotkeys.esp [Version 2.1.1] Author: TheNiceOneEnhanced Seasons.espEnhanced Vegetation xxx.espEnhanced Water v2.0 HD.espEnhanced Water v2.0 HD - SI Addon.espEnhanced Water v2.0 HDMI.espES4_Alchemists Reference.espEthereal - Eyes.espEVE_KhajiitFix.espEVE_KnightsoftheNine.espEVE_ShiveringIslesEasterEggs.espEY_BM_Armory.espExterior Actors Have Torches 1.3 CT.espFastEquipping.esp [Version 1.01]FineWeapons for OOO.espFormID Finder4.espFort Akatosh Redux.espFrancesco's Optional Chance of More Enemies.esp [SI version]Francesco's Optional Chance of Stronger Bosses.esp [SI version]Francesco's Optional Leveled Guards.esp [SI version]Get Wet.espGet Wet - just droplets.espGGValeria2_0.espGhost Rider Helmet.espGrimbotsSpellTomes.espGuards of Cyrodiil Redux.espHarvest [Flora] - DLCVileLair.espHeartOftheDead.esp [Version 6.5]Hemingweys Capes.espHigher Thieves' Guild Fence Amounts.espHUD Status Bars.esp Author: TheNiceOneicPlayerHome.esp [no version number] Author: StrotiImmersive Interiors.espImmersive Interiors - Lights.espImmersiveWait.espImpeREAL City Unique Districts – xxx (v2.8.0)ImpeREAL Empire - Unique Castles (all plugins)ImpeREAL Empire - Unique Castles - All the Castles -OCC.espImpeREAL Empire - Unique Castles - All the Castles -OCR.espImpeREAL Empire Unique Cities - Sutch.espImpeREAL Empire - Unique Forts.espImperial Furniture Renovated.espKragenir's Death Quest.espKDCircletsOOOOptimized - Loot Only.espkuerteeCleanUp.espKvatchRankFix.espKyoma's Journal Mod.espLich King's Helm v1_0.espLoadingScreens.espLoadingScreensAddOn.espLoadingScreensSI.espLoths Blunt.esp (as of 3.0.1+)Loth's Blunt Weapons for Npcs.esp [Version 3.0.1]Mage Equipment.espMaleBodyReplacerV4.espMap Marker Overhaul.esp Author: TheNiceOneMap Marker Overhaul - SI additions.esp Author: TheNiceOneMergedMaps.espMiniMap.espMIS New Sounds Optional Part.espMMM-Cobl.esp [Version 1.73]Moonshadow Elves - Sc.espMorrigan Armor Set v1_0.espMorrowind Robes and Dresses for HGEC.espMystery of the Dulan Cult.esp (Better Cities replacer plugin)Natural_Habitat_by_Max_Tael.espNicos Scimitars Back.espNight Knight Armor.espNightshade_Armor.espNNWARE Rhyelia Emero.espNo More Annoying Messages.espOblivifall - Losing My Religion.esp [v1.4]Oblivion XP.espOL_MyBrumaFireplace.espOld Crow Inn (as of version 1.5)OOO 1.32-Cobl.esp [Version 1.32]Open Better CitiesOTEP - Aleswell.espP1DkeyChain.espPlate of the Shadow.espPowerAttack Voicemod.espPowerAttack Voicemod - The Shivering Isles.espProgressMBSP.esp [v2.00]ProgressSBSP.esp [v1.00]ProgressRBSP.esp [v1.00]ProgressRacial.esp [v1.00]PTRoamingNPCs.espQuest Award Leveller and DLC patchesQuest Log Manager.espRealisticForcexxx.espRealisticMagicxxx.espReal Lava 1.3.espRealSleep.espReneersNotesMod.espReznod Mannequin.espRingwraithArmorSteel.espRustyItems for OOO.espSaerileth.espScript Effect Silencer.espSide's Sailing Ships.espSlof's Oblivion Robe Trader.espShadowWatcher_HGEC_v2.espShivering OOO.espSM_COBL.esp [Version from Supreme Magicka 0.90b6 download]SM_DeadlyReflex.esp [Version from Supreme Magicka 0.90b6 download]SM_DLCSpellTome.espSM_EnchantStaff.espSM_MMM.espSM_OOO.espSM_Scrolls.espSM_SigilStone.espSM_ShiveringIsles.esp [Version from Supreme Magicka 0.90b6 download]Smite of Order.espSPB Mercenary Armors.espSpell Delete.espStarX Vampire Deaths.espStarX Vanilla Vampires Revised.esp [Later versions have removed the NULL refs.]StealthOverhaul.espStopDarkBrotherhood.espSundered Keep.esp [v1.16]SupremeMagicka.esp [Version 0.90b6]Syc_AtHomeAlchemy.espSymphony of Violence.esptalkwithyourhands2.espTamriel Resource Pack.espTamrielTravellerAdvscript.espTamrielTravellers Cosmetics Cobl or RBP.espTamrielTravellersItemsCobl.espTamrielTravellersItemsnpc.espThe Blade of the HauntedThe Power Attack Voice ModToaster Says Share Faction Recruitment.espToggleable Quantity Prompt.esptrfjBladeMasterSword.esptrfjSolarisStaff.esptrfjSpiderGreatsword.espTRN One of the GangTyrael Armor.espUFF & RM Black Plate Armor.espUnderworld Armor.espUnique Landscapes mods (all of them)Unofficial Oblivion Patch.esp [Version 3.3.3]Unofficial Official Mods Patch (all plugins)Unofficial Shivering Isles Patch.esp [Version 1.4.0]Update My Statue.espVanityCameraSmoother.espVASE - Cyrodiil for MMM.espVASE - Vanilla SI.espViconia.espVillages1.1.esp [Version 1.1b is clean. Not recommended to use previous versions, which are still dirty.]Visual Health Indication, Cobl.espVOILA.espWarglaives by Jojjo v1.0.espWeapon Expansion Pack for Oblivion Enthusiasts.esp Willful Resistance.espWindowLightingSystem.esp [Version 5.3.5]XiaNewAmuletsV1.espX.Races.Comp.espza_less_NPC_conversations.espArthmoor's mods...such as...Cyrodiil Travel ServicesFaregyl VillageNew Roads and Bridges RevisedOpen CitiesOpen Cities New SheothRAEVWD Cities.espRAEVWD Imperial City.espRAEVWD New Sheoth.esp
Mods That Should Not Be Cleaned
ArmamentariumArtifacts.espBG2408's mods (LAME, RBP, Integration)EXCEPTION: bgIntegration.esp contains a single deleted reference, but do nothing beyond addressing that.FCOM (None of the .esp/.esm files should be cleaned)Mart's Monster Mod - City Defences.esp (author says to not clean)Mart's Monster Mod - Gems & Gem Dust.esp (author says to not clean)Mart's Monster Mod - Hunting & Crafting.esp (author says to not clean)Oblivion WarCry EV.esp [Version 1.09] (do not clean core FCOM mods)Oscuro's_Oblivion_Overhaul.esm (do not clean core FCOM mods)Oscuro's_Oblivion_Overhaul.esp (do not clean core FCOM mods)Personality Idles - Modified version.esp (author confirmed that cleaning breaks functionality)SM Plugin Refurbish (Battlehorn and ThievesDen, specifically, but this goes for all the plugins) [contains dirty dialogue edits that are intentional for mod functionality, do not clean]SupremeMagicka.esp [Version 0.90b6] (Do not clean beyond what the author cleaned already)
Oh, and please don't ask for implicit dependencies to be added for every mod here, I would have died three times over before I finished with that.
Thanks to:
Brumbek (For writing the guide)
Tommy_H (For reorganizing the lists)
ElminsterEU (For TES4Edit, none of this would be possible without it)