When one of these seemingly indestructible ships ventured to the land of those other elves on that other continent they got absolutely hammered, so why can't they be destroyed in combat?
Not sure where you got "indestructible" from.
As for what they are? Theories. Not even MK seems to have a solid idea as he contradicts himself. So I take his contradictions and combine them into one concept.
They glide from the sun[Anu] in times of great need. Which is to say, they serve only in Alinor's defense. They glide from the Sun in unison, shooting sun beams out of their beaks or whatever. Which gives the Aldmeri Navy some aerial support.
He did have to making several compromises tto his own lore due to gameplay reasons.
*COUGH* Cyrodill was a diverse jungle *COUGH*