He didn't mean that the COC became a dunmer, but that he went crazy LIKE him....
(and the Nerevarine also isn't race bound)
What he said about the fact that every questline is infact a different person only goes (As I believe) with the different Guilds, not with the expansions (Since the events of Tribunal are also noted to the Nerevarine, but in-game you didn't needed to be the Nerevarine to complete it..) Most lore sites also give the expansion storylines to the champion of the game.. (not all of them, but most)
In general, MQs of the main game and expansions are the true canon, sides are however you want it and most often will be vague in the canon (if it's mentioned at all).
But, since OB is highly linear in the guild quests, what if the CoC really did do all that? If so, it's quite obvious the CoC suffers from heavy split personality disorder, which could lend more credibility of why Sheogorath wanted the CoC to become the new Sheogorath! TWIST! You were insane the whole time and pulled off so many different feats.