Not using anything like that. I dont suppose the vanilla game auto save stuff could cause this? I'm not an expert with scripts but I dont think that unless all conversations like this use the same script it wouldnt happen in every one of them.
While probably not as problematic as an autosave mod could be, I'm sure Skyrim's default save system could cause the issue. I'm more or less thinking of the "Save in Menu" feature, though I don't know if there are any exceptions as to when that's triggered.
I think the problem more or less stems from re-loading a save that was maybe more or less in the middle of running a script, essentially meaning the save was corrupt. What you could try doing is reloading the saves before your most recent save, and then going through a quest that initiates that sort of dialogue (such as the quest with Tolfdir) and see if it's triggered correctly or not. Hopefully, the save that still works isn't too far from your most recent save.
Again, don't take my word as fact on all of this, as I don't really know why this happens myself. I'm sure someone else will post in here knowing the exact reason and how to possibly avoid it.