Can the GECK edit existing or create new perks?
The section of the file you're looking for is Actor Data -> Perks.
You can either right click -> New or take an existing perk and change the ID to have the GECK make you a copy automatically that you can then change to your heart's content.
You can also edit everything about any existing perk, both levelup, follower and quest granted.
Oh, and PredatorX: Perks don't use scripts by and large, they include their own mini-script-like effects. Basically you can pick a defined effect (found under Actor Effects) or a defined numerical operation and what to operate on like "calculate my critical chance, multiply by 1.05" for 5% bonus crit chance.