I am running into two separate issues with both FWE - FO3 Wandered Edition and Dimonized TYPE3 Body Replacer.

First issue:
With FWE, for some reason when I select the alternate start, the game crashes once I am in the shack, regardless of it being the only mod, or having multiple mods, FWE just doesn't run past alternate start. However, the regular start works fine without crashes. I can't figure out whats causing it, here is my load order.

fallout3.esm
thepitt.esm
brokensteel.esm
pointlookout.esm
zeta.esm
craft.esm
calibr.esm
fo3 wanderers edition - main file.esm
project beauty.esm
project beauty- broken steel.esp
project beauty- point lookout.esp
fo3 wanderers edition - main file.esp
fo3 wanderers edition - dlc broken steel.esp
fo3 wanderers edition - dlc mothership zeta.esp
fo3 wanderers edition - project beauty.esp
fo3 wanderers edition - project beauty (followers enhanced).esp
fo3 wanderers edition - dlc point lookout.esp
fo3 wanderers edition - dlc the pitt.esp
fo3 wanderers edition - alternate travel.esp
fo3 wanderers edition - followers enhanced.esp
fo3 wanderers edition - followers enhanced (brokensteel).esp
fo3 wanderers edition - optional restore tracers.esp
fo3 wanderers edition - optional restore tracers (automatics only).esp
followers revive.esp

TYPE3 Body replacer:
This one I can't figure out either. I'v found similar screenshots to my issue, however since the content of TYPE3 is advlt, I cannot post it on the forums. However, the textures of the bodies seem to mess up. The "default" brown underwear in FO3 seems to be upside down and inverted upward to the stomach. As well, the skin textures seem kind of messed up as well, and they appear to have patches of "pure smooth skin" showing through the TYPE3 texture skin. Any help on this one at all?

You can check the TYPE3 screenshots on FO3 Nexus, some people have posted images of the issue.

The only problems I can see with your load order are the esp's listed below. You need to select just one of each. Since you're using Broken Steel you'd go with the second followers enhanced and then pick just one of the restore tracers esps.

fo3 wanderers edition - followers enhanced.esp
fo3 wanderers edition - followers enhanced (brokensteel).esp

fo3 wanderers edition - optional restore tracers.esp
fo3 wanderers edition - optional restore tracers (automatics only).esp

Also, I've never used the followers revive before and have no idea if it's compatible with fwe but have you tried disabling it and see if it makes any difference.

Not sure about the body replacer. I use it and have never had any problems. Are you using ArchiveInvalidation Invalidated (http://www.fallout3nexus.com/downloads/file.php?id=944).

I had this problem with FWE+Project Beaty and Type3 when installed CALI body and textures. Everything works ok with Base HD type.