So I was messing with making containers for my new home and I accidently left the respawn on one and lost my 15 Unusual gems.

I really do not want to reload an old save game. Anyone know for sure if I just give 15 to myself via the console or the CK if that will not break the quest?

I am worried that the gems are numbered REFS that will need to match the quest scripts/conditions.

you can add 15 gems through console but it will not advance the quest and you will be stuck with 15 unusual gems in your inventory you can use console command to advance the quest though. also unusual gems can not be removed from inventory unless you are using mods that disables that.