No, you're not alone. I only play the Game of the Year Edition (used to have the original until GOTY came out of course). I honestly don't think I'm ready for mods, besides Bethesda's official plug-ins. Other than that, I feel like I must complete the game around every nook and cranny of the entire game by myself; no guides. I also hate cheating. I even consider recalling to a dungeons entrance in Daggerfall as cheating if I get stuck, but thats just me I guess. I'll start using mods whenever I've officially "beaten" Morrowind, I guess you could say. Then I will have some fun in the sandbox world of awesomeness. But it's gonna be a while before that happens.
I'm playing a lvl 66 Nord Warrior*, at 100 Difficulty, with his HP capped at 300 and a modded (custom) armor with 250 total Armor Rating when full equipped (Medium Armor), which is nice but far from the maximum you can reach in Vanilla game. My favourite sword is also from a mod, and it has 70 base damage at most (more than a Vanilla Daedric Dai-Katana, less than a Daedric Claymore), and definitely much less than a Vanilla Daedric Warhammer/Battle Axe (plus it was originally unenchanted, and I had to enchant it manually, and myself. Got lucky and succeeded at the 2nd try). Playing this is more difficult that you think, especially on Tribunal.
If you don't know how to reach balance it's your problem, but don't call mods "cheating".
*Actually he's a Warrior who has mastered Restoration/Mysticism/Alteration. It's more a "Mystic Warrior". That's why I was able to enchant my sword myself.