Solid Snake aside, it's patently obvious that war does in fact change (pre-nuclear war, nuclear war, and Wasteland war really have little in common), but that's stating the obvious. It sounds badass when Ron Perlman says it, but does anyone have any interpretations of its meaning?
The best explanation I can think of is that it's a statement about human nature: No matter what happens, even if the planet gets blown to hell, people will always take up arms against each other. That's probably not the intended meaning, or at least not all of it; it is war that never changes, rather than people.