Just what the topic title says. This might be a stupid question, and if it is, I apologize. But anyways, I looked into the actual program folder but I coudn't determine where exactly the save files were being kept. I want to back them up on a flash drive just in case something happens to my computer (again), which I just had to reload my operating system on. Thanks.

I have a disc install outside of x86 and the files are located in the Morrowind folder under "saves".

In the Morrowind install directory, C:\Program Files\Bethesda Softworks\Morrowind by default, there should be a folder labeled Saves. They should be in there.

If not there check My Documents/My Games/Morrowind