I think they will be in. No one is really hunting them down except a few measly blades and now Parthanaxx is tryi g to make dragons follow the way of the voice. But I'm sure another dragon will make an apposing faction to Parthanaxx and will seek power.
Also since the dragons have returned we are the only Dragonborn (except Mirrak) we know of and we can only kill then permanently. And they have probably have awoken all across Tamriel. So yes I believe they would be in future TES games. Hopefully we will get different types of dragons like water serpent ones, flightless ones, ones with arms and legs and wings ect.