I'm gonna make a hopefully useful contribution...
I notice that the file manipulation software pictured in the Guide is rather simplistic and cumbersome. There's an excellent freeware file manager called http://www.freecommander.com/ that is not only full-featured but, once properly configured in dual-pain mode, makes file management a breeze. I've tried other freeware file managers designed to work with Vista and Win7 64-bit. This one, for me, has by far the most logical window arrangement for those who do a lot of moving/copying of files between directories/partitions. http://i307.photobucket.com/albums/nn303/Decrepit_Waste/ESIV%20errors/FreeCommander2.jpg showing both a portion of my Bash Installers directory and my BAIN package building directory (with the Elsweyr-Anequina BAIN folder highlighted).
(OOPS! Looking at my Bash Installers window reminds me that I still need to remove older versions of the several AWLS packages.)
-Decrepit-
Weeell, back in the days of the amiga these kind of things were preferable sometimes, X-Copy Pro and OPUS come to mind, earlier on PC's too we had a superb program called X-Tree Gold (in fact I think theres a PC conversion of OPUS aswell) which could do dual windows for a source and destination and allow W.I.M.P (windows, icon, mouse, pointer) interface to execute DOS commands not so easily useable otherwise. Another one on the amiga was simply called Browser, loved that one, you could script your own menu functions to do anything you wanted with AmigaDOS limited only by your scripting imagination.....
These days, for me Windows 7 side-by side auto-resizing of windows does the job for me, with a couple of registry edits for extra right click pop-up options.....
http://www.bild.me/bild.php?file=2645964Untitled.jpg
Saving the following snips of code using notepad to CopyTo.reg file and MoveTo.reg file (they need to end with .reg not notepads default .txt), then double click to get windows to register them...
Copy To....
Spoiler Windows Registry Editor Version 5.00
[HKEY_CLASSES_ROOT\AllFilesystemObjects\shellex\ContextMenuHandlers\Copy to]
@="{C2FBB630-2971-11D1-A18C-00C04FD75D13}"
Move To....
Spoiler Windows Registry Editor Version 5.00
[HKEY_CLASSES_ROOT\AllFilesystemObjects\shellex\ContextMenuHandlers\Move to]
@="{C2FBB631-2971-11D1-A18C-00C04FD75D13}"
Oh yeah heres the Open With Notepad one too...
Spoiler Windows Registry Editor Version 5.00
[HKEY_CLASSES_ROOT\*\shell\Open with Notepad\Command]
@="notepad.exe %1"
http://www.bild.me/bild.php?file=8806243Untitled2.jpg
Using Copy to and Move to you dont really need a source and destination window, because those commands open a dialogue asking you where you want the file copied/moved to ( windows remembers the last destination too, mine for instance is permanently remembering Bash Installers

)
I considered suggesting people try windows explorer Tree Views, which would look pretty much the same as Free Commander in use (I have no doubt Free Commander adds more functionality but for our purposes its just replicating what windows can already do), but depending on how they enable that they may have trouble getting back to folders views or whatever they are comfortable with (and then you have to show people how to do that in XP, Vista and 7) so kept it simple instead.
The windows in the guide look awkward because I just resized and bunched them to make the shots smaller, I dont really want to go suggesting people install extra software for different parts of the guide, suggestions for the PDF were necessary ( and knowing some will use Adobe's bloatware made me cringe slightly at the suggestion of using PDF's

) - I think for the purpose of the guide adding more and more installations is going to put people off, its complicated enough for some (after all they have already had to endure solving the intricate quirks of getting Wrye Bash going first).