I'm not talking about a large faction, like Imperials or Vampires. Who was your favorite enemy that you've fought in Skyrim?
Me, personally? Harkon, an honorable mention being the Ebony Warrior.
Boss fights in Legendary Mode are always fun for me. Harkon is the only vampire in the game that actually uses his transformation or his powers. Additionally, as a Paladin, I employed my Sunlight Spells to the maximum. It's always great to cut lose and unleash all of that fury! Every skeleton slain with the Dawnbreaker would blow up in holy light, dealing more damage to Harkon. I would power bash him with Auriel's Shield, slice at him with my sword, dual cast a Vampire's Bane in his face, and finally end the fight with a Sunhallowed Arrow, right through the heart, of course!